Fig. 2

Genomic annotation and similarity assessment of a novel Cassava Common Mosaic Virus (CsCMV) strain, mined from the Aratus pisonii metagenome data. The viral genome was identified from DNA data, suggesting it was reverse transcribed in the host cell. The genome represents all five of the open reading frames common to CsCMV, along with a short PolyA tail. Single nucleotide polymorphism comparison across the genome is presented, ranging from green (dissimilar) to black (similar). Whole genome nucleotide phylogenetics, replicase protein phylogenetics and capsid protein phylogenetics are present, as well as a pairwise comparison of both the replicase and capsid proteins across the strains. Graphics developed in CLC genomics workbench V. 20. Phylogenetic trees developed in IQtree. Similarity tables developed using Sequence Demarcation Tool V. 1.2