Table 1 Alphaflexiviridae nucleotide and protein similarity table, determined using BLASTn and BLASTp
Genetic region/protein | Hit (accession) | Coverage (%) | Similarity (%) | E-value |
|---|---|---|---|---|
Whole genome (nucleotide) | Cassava common mosaic virus isolate Hainan-CM (MW175326) | 99 | 98.5 | 0.0 |
Replicase (protein) | Cassava common mosaic virus (QJS39010) | 100 | 98.4 | 0.0 |
TGB1 (protein) | Cassava common mosaic virus (QIA16092) | 100 | 96.5 | 2e-166 |
TGB2 (protein) | Cassava common mosaic virus (QKG28055) | 100 | 95.5 | 1e-70 |
TGB3 (protein) | Cassava common mosaic virus (QKG28056) | 100 | 96.8 | 1e-57 |
Capsid (protein) | Cassava common mosaic virus (QKG28057) | 100 | 97.3 | 2e-162 |